MolNFT v1 · #191218 · protein
Local refinement of band 3-III transmembrane domains, class 1 of erythrocyte ankyrin-1 complex
8CRR: “Local refinement of band 3-III transmembrane domains, class 1 of erythrocyte ankyrin-1 complex”. Electron microscopy, 3 ligands (CLR, PIO, NAG). MolNFT v1 #191218 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 8CRR
- Type
- protein
- Length
- 1,114 residues
- Chains
- 4
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P02724, P02730
- Ligands
- CLR, PIO, NAG
Structure
electron microscopy · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B, D | — | protein | 40 | — | P02724 |
| C, E | — | protein | 517 | — | P02730 |
Ligands and binding sites
- CLR · Cholesterol · ligand · 2 copies · chains B, C, D, E
- PIO · [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2, 3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate · ligand · 2 copies · chains C, E
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 4 copies · chains C, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 8CRR · Local refinement of Band 3-III transmembrane domains, class 1 of erythrocyte ankyrin-1… · the same entry in another collection · chain E against E, TM-score 1.00
- P02730 · AlphaFold monomer V2.0 prediction for band 3 anion transport protein (P02730) · a predicted model of the same protein · chain C against A, TM-score 0.99
- P02724 · AlphaFold monomer V2.0 prediction for glycophorin-a (P02724) · a predicted model of the same protein · chain D against A, TM-score 0.63
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02724
- Every structure of UniProt P02730
- Elsewhere: RCSB PDB 8CRR · PDBe 8CRR · UniProt P02724 · UniProt P02730
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