MolNFT v1 · #190252 · protein
Methionyl-tRNA synthetase from staphylococcus aureus complexed with a phenylbenzimidazole inhibitor
7WPI: “Methionyl-tRNA synthetase from staphylococcus aureus complexed with a phenylbenzimidazole inhibitor”. X-ray diffraction, 1 ligand (1V7). MolNFT v1 #190252 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7WPI
- Type
- protein
- Length
- 520 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q5HII6
- Ligands
- 1V7
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 520 | — | Q5HII6 |
Ligands and binding sites
- 1V7 · 2-(4-bromanyl-3-oxidanyl-phenyl)-1-[(1R)-2-[2-(2-tert-butylphenoxy)ethanoylamino]-1-(3,4-dimethoxyphenyl) ethyl]-N-methyl-benzimidazole-5-carboxamide · ligand · chains A
- EDO · 1,2-ethanediol · additive · 2 copies · chains A
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7WPI · Methionyl-tRNA synthetase from Staphylococcus aureus complexed with a phenylbenzimidazole… · the same entry in another collection · chain A against A, TM-score 1.00
- Q5HII6 · AlphaFold monomer V2.0 prediction for methionine--tRNA ligase (Q5HII6) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5HII6
- Elsewhere: RCSB PDB 7WPI · PDBe 7WPI · UniProt Q5HII6
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