MolNFT v1 · #189650 · protein
Neryl diphosphate synthase from solanum lycopersicum
7VPC: “Neryl diphosphate synthase from solanum lycopersicum”. X-ray diffraction, 1 ligand (MLT). MolNFT v1 #189650 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7VPC
- Type
- protein
- Length
- 472 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- C1K5M2
- Ligands
- MLT
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 237 | — | C1K5M2 |
| B | — | protein | 235 | — | C1K5M2 |
Ligands and binding sites
- MLT · D-malate · ligand · 2 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 8 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7VPC · Neryl diphosphate synthase from Solanum lycopersicum · the same entry in another collection · chain B against B, TM-score 1.00
- C1K5M2 · AlphaFold monomer V2.0 prediction for dimethylallylcistransferase CPT1, chloroplastic… · a predicted model of the same protein · chain B against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C1K5M2
- Elsewhere: RCSB PDB 7VPC · PDBe 7VPC · UniProt C1K5M2
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