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MolNFT v1 · #189616 · protein

Structure of human KCNQ4-ML213 complex with PIP2

7VNP: “Structure of human KCNQ4-ML213 complex with PIP2”. Electron microscopy, 3 ligands (PT5, 7YV, K). MolNFT v1 #189616 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
7VNP
Type
protein
Length
1,904 residues
Chains
8
Method
electron microscopy
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P56696, A0A140NCD0, P0DP25
Ligands
PT5, 7YV, K

Structure

electron microscopy · 2 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A, C, E, G—protein332—P56696, A0A140NCD0
B, D, F, H—protein144—P0DP25

Ligands and binding sites

  • PT5 · (1S)-2-{[(R)-hydroxy{[(1r,2r,3s,4r,5r,6s)-2,3,6-trihydroxy-4,5-bis(phosphonooxy) cyclohexyl]oxy}phosphoryl]oxy}-1-[(octadecanoyloxy) methyl]ethyl (8E,11E)-icosa-5,8,11,14-tetraenoate · ligand · 8 copies · chains A, C, E, G
  • 7YV · (1S,2S,4R)-N-(2,4,6-trimethylphenyl) bicyclo[2.2.1]heptane-2-carboxamid · ligand · 4 copies · chains A, C, G, E
  • K · Potassium ion · metal · 4 copies · chains A, C, E, G

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 7VNP · Structure of human KCNQ4-ML213 complex with PIP2 · the same entry in another collection · chain H against H, TM-score 1.00
  • P56696 · AlphaFold monomer V2.0 prediction for potassium voltage-gated channel subfamily kqt… · a predicted model of the same protein · chain A against A, TM-score 0.78
  • P0DP25 · AlphaFold monomer V2.0 prediction for calmodulin-3 (P0DP25) · a predicted model of the same protein · chain H against A, TM-score 0.43

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