MolNFT v1 · #189389 · protein + DNA
The motor-nucleosome module of human chromatin remodeling pbaf- nucleosome complex
7VDT: “The motor-nucleosome module of human chromatin remodeling pbaf- nucleosome complex”. Electron microscopy, 3 ligands (BEF, ADP, MG). MolNFT v1 #189389 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7VDT
- Type
- protein + DNA
- Length
- 1,656 residues
- Chains
- 11
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P51532, P62799, Q6AZJ8, P02281, A0A310TTQ1
- Ligands
- BEF, ADP, MG
Structure
electron microscopy · 10 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 617 | — | P51532 |
| B | — | protein | 87 | — | P62799 |
| C | — | protein | 107 | — | Q6AZJ8 |
| D, H | — | protein | 93 | — | P02281 |
| E | — | protein | 95 | — | A0A310TTQ1 |
| F | — | protein | 86 | — | P62799 |
| G | — | protein | 108 | — | Q6AZJ8 |
| I | — | dna | 135 | — | — |
| J | — | dna | 137 | — | — |
| K | — | protein | 98 | — | A0A310TTQ1 |
Ligands and binding sites
- BEF · Beryllium trifluoride ion · ligand · chains A
- ADP · Adenosine-5'-diphosphate · ligand · chains A
- MG · Magnesium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7VDT · The motor-nucleosome module of human chromatin remodeling PBAF-nucleosome complex · the same entry in another collection · chain K against K, TM-score 1.00
- P62799 · AlphaFold monomer V2.0 prediction for histone H4 (P62799) · a predicted model of the same protein · chain F against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P51532
- Every structure of UniProt P62799
- Every structure of UniProt Q6AZJ8
- Every structure of UniProt P02281
- Every structure of UniProt A0A310TTQ1
- Elsewhere: RCSB PDB 7VDT · PDBe 7VDT · UniProt P51532 · UniProt P62799 · UniProt Q6AZJ8 · UniProt P02281 · UniProt A0A310TTQ1
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