MolNFT v1 · #1882 · protein
Basic fibroblast growth factor complexed with heparin tetramer fragment
1BFB: “Basic fibroblast growth factor complexed with heparin tetramer fragment”. X-ray diffraction, 3 ligands (UAP, SGN, IDS). MolNFT v1 #1882 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1BFB
- Type
- protein
- Length
- 124 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Basic fibroblast growth factor
- UniProt
- P09038
- Ligands
- UAP, SGN, IDS
Structure
x-ray diffraction · 1 distinct chain · 7% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Basic fibroblast growth factor | protein | 124 | 7% helix, 43% strand | P09038 |
Ligands and binding sites
- UAP · 4-deoxy-2-O-sulfo-alpha-L-threo-hex-4-enopyranuronic acid · ligand
- SGN · 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose · sugar · 2 copies · chains A
- IDS · 2-O-sulfo-alpha-L-idopyranuronic acid · sugar · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 1BFB · Basic fibroblast growth factor complexed with heparin tetramer fragment · the same entry in another collection · chain A against A, TM-score 1.00
- P09038 · AlphaFold monomer V2.0 prediction for fibroblast growth factor 2 (P09038) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P09038
- Elsewhere: RCSB PDB 1BFB · PDBe 1BFB · UniProt P09038
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