MolNFT v1 · #187958 · protein
Cryoem structure of the hcmv pentamer GH/GL/UL128/UL130/UL131A in complex with thbd and neutralizing fabs msl-109 and 13H11
7T4R: “Cryoem structure of the hcmv pentamer GH/GL/UL128/UL130/UL131A in complex with thbd and neutralizing fabs…”. Electron microscopy, 1 ligand (NAG). MolNFT v1 #187958 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7T4R
- Type
- protein
- Length
- 3,595 residues
- Chains
- 19
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P07204, F5H9T3, Q71DN9, Q38LY2, Q38M07, Q8AZ45
- Ligands
- NAG
Structure
electron microscopy · 15 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 144 | — | P07204 |
| B | — | protein | 630 | — | F5H9T3 |
| C | — | protein | 233 | — | Q71DN9 |
| D | — | protein | 129 | — | Q38LY2 |
| E | — | protein | 163 | — | Q38M07 |
| F | — | protein | 109 | — | Q8AZ45 |
| G, P | — | protein | 120 | — | — |
| H, Q | — | protein | 104 | — | — |
| I, R | — | protein | 111 | — | — |
| J, S | — | protein | 127 | — | — |
| K | — | protein | 633 | — | F5H9T3 |
| L | — | protein | 230 | — | Q71DN9 |
| M | — | protein | 132 | — | Q38LY2 |
| N | — | protein | 163 | — | Q38M07 |
| O | — | protein | 105 | — | Q8AZ45 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 14 copies · chains B, C, E, F, K, N, M, O
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7T4R · CryoEM structure of the HCMV Pentamer gH/gL/UL128/UL130/UL131A in complex with THBD and… · the same entry in another collection · chain S against S, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P07204
- Every structure of UniProt F5H9T3
- Every structure of UniProt Q71DN9
- Every structure of UniProt Q38LY2
- Every structure of UniProt Q38M07
- Every structure of UniProt Q8AZ45
- Elsewhere: RCSB PDB 7T4R · PDBe 7T4R · UniProt P07204 · UniProt F5H9T3 · UniProt Q71DN9 · UniProt Q38LY2 · UniProt Q38M07 · UniProt Q8AZ45
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