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MolNFT v1 · #187848 · protein + RNA

Structure of the delta dii ires W/O EIF2 48S initiation complex, closed conformation. structure 13(DELTA dii)

7SYU: “Structure of the delta dii ires W/O EIF2 48S initiation complex, closed conformation. structure 13(DELTA dii)”. Electron microscopy, 1 ligand (ZN). MolNFT v1 #187848 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
7SYU
Type
protein + RNA
Length
6,856 residues
Chains
37
Method
electron microscopy
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
G1TLT8, G1SS70, G1TNM3, G1TK17, G1TFM5, G1TM55, G1SVB0, G1TJW1, B7NZS8, G1TPV3, G1TRM4, G1SFR8, G1SP51, G1U472, G1U0Q2, G1SGX4, G1TU13, G1TPG3, G1TN62, G1SIZ2, G1TM82, G1TG89, G1SZ47, A0A5F9CNN4, G1TDB3, G1TZ76, G1TIB4, G1U7M4, G1T8A2, G1SK22, G1SJB4, A0A087WNH4
Ligands
ZN

Structure

electron microscopy · 37 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
2—rna1697——
B—protein217—G1TLT8
C—protein213—G1SS70
D—protein221——
E—protein228—G1TNM3
F—protein262—G1TK17
G—protein191—G1TFM5
H—protein237—G1TM55
I—protein185—G1SVB0
J—protein206—G1TJW1
K—protein185—B7NZS8
L—protein96—G1TPV3
M—protein151—G1TRM4
N—protein117—G1SFR8
O—protein149—G1SP51
P—protein136—G1U472
Q—protein120—G1U0Q2
R—protein142—G1SGX4
S—protein132—G1TU13
T—protein144—G1TPG3
U—protein141—G1TN62
V—protein100—G1SIZ2
W—protein83—G1TM82
X—protein129—G1TG89
Y—protein141—G1SZ47
Z—protein124—A0A5F9CNN4
a—protein77—G1TDB3
b—protein101——
c—protein83—G1TZ76
d—protein67—G1TIB4
e—protein55—G1U7M4
f—protein57—G1T8A2
g—protein68—G1SK22
h—protein313—G1SJB4
n—protein25—A0A087WNH4
z—rna188——
i—rna75——

Ligands and binding sites

  • ZN · Zinc ion · metal · chains b

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 7SYU · Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation.… · the same entry in another collection · chain 2 against 2, TM-score 1.00

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