MolNFT v1 · #187747 · protein

Cryoem structure of DNA-pk complex VIII

7SUD: “Cryoem structure of DNA-pk complex VIII”. Electron microscopy, 2 ligands (ATP, MG). MolNFT v1 #187747 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7SUD
Type: protein
Length: 3,749 residues
Chains: 2
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P78527, P13010
Ligands: ATP, MG

Structure

electron microscopy · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	3740	—	P78527
C	—	protein	9	—	P13010

Ligands and binding sites

ATP · Adenosine-5'-triphosphate · ligand · chains A
MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7SUD · CryoEM structure of DNA-PK complex VIII · the same entry in another collection · chain C against C, TM-score 1.00
P13010 · AlphaFold monomer V2.0 prediction for X-ray repair cross- complementing protein 5 (P13010) · a predicted model of the same protein · chain C against A, TM-score 0.68

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P78527
Every structure of UniProt P13010
Elsewhere: RCSB PDB 7SUD · PDBe 7SUD · UniProt P78527 · UniProt P13010

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