MolNFT v1 · #187599 · protein
P107 pocket domain complexed with HDAC1 peptide
7SME: “P107 pocket domain complexed with HDAC1 peptide”. X-ray diffraction, 1 ligand (SO4). MolNFT v1 #187599 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7SME
- Type
- protein
- Length
- 352 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P28749, Q13547
- Ligands
- SO4
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 342 | — | P28749 |
| B | — | protein | 10 | — | Q13547 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7SME · p107 pocket domain complexed with HDAC1 peptide · the same entry in another collection · chain A against A, TM-score 1.00
- P28749 · AlphaFold monomer V2.0 prediction for retinoblastoma-like protein 1 (P28749) · a predicted model of the same protein · chain A against A, TM-score 0.98
- Q13547 · AlphaFold monomer V2.0 prediction for histone deacetylase 1 (Q13547) · a predicted model of the same protein · chain B against A, TM-score 0.42
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P28749
- Every structure of UniProt Q13547
- Elsewhere: RCSB PDB 7SME · PDBe 7SME · UniProt P28749 · UniProt Q13547
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