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MolNFT v1 · #187581 · protein

Full-length insulin receptor bound with site 2 binding deficient mutant insulin (a-L13R) -- symmetric conformation

7SL3: “Full-length insulin receptor bound with site 2 binding deficient mutant insulin (a-L13R) -- symmetric…”. Electron microscopy, 20 pockets (best druggability 0.76). MolNFT v1 #187581 on GenesisL1: 3D structure, binding sites and…

PDB
7SL3
Type
protein
Length
1,736 residues
Chains
6
Method
electron microscopy
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Insulin receptor; Insulin B chain; Insulin a chain
EC
2.7.10.1
UniProt
P15208, P01308
Pockets
20 · best druggability 0.76

Structure

electron microscopy · 3 distinct chains · 14% helix, 29% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
A, BInsulin receptor (EC 2.7.10.1)protein82012% helix, 30% strandP15208
C, DInsulin B chainprotein2737% helix, 4% strandP01308
E, FInsulin a chainprotein2162% helix, 5% strandP01308

Pockets

20 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
17340.760.8165empty
27210.750.8166empty
33710.740.8560empty
44240.630.7742empty
55100.600.7455empty

Interfaces

11 interfaces between chains.

  • A–B · 2860 Ų buried · 31 hydrogen bonds · protein-protein
  • C–E · 683 Ų buried · 7 hydrogen bonds · protein-protein
  • D–F · 682 Ų buried · 8 hydrogen bonds · protein-protein
  • A–D · 534 Ų buried · 2 hydrogen bonds · protein-protein
  • B–C · 521 Ų buried · 2 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 40 disulfide (disulfide).

Compared structures

  • 7SL3 · Full-length insulin receptor bound with site 2 binding deficient mutant insulin (A-L13R)… · the same entry in another collection · chain C against C, TM-score 1.00
  • P15208 · AlphaFold monomer V2.0 prediction for insulin receptor (P15208) · a predicted model of the same protein · chain A against A, TM-score 0.49

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