MolNFT v1 · #187089 · protein + DNA
Structure of DNA polymerase zeta with mismatched DNA
7S0T: “Structure of DNA polymerase zeta with mismatched DNA”. Electron microscopy, 3 ligands (SF4, DCP, CA). MolNFT v1 #187089 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7S0T
- Type
- protein + DNA
- Length
- 2,203 residues
- Chains
- 7
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P14284, P38927, A0A6A5PTG9, P47110
- Ligands
- SF4, DCP, CA
Structure
electron microscopy · 7 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 1231 | — | P14284 |
| D | — | protein | 161 | — | P38927 |
| E | — | protein | 204 | — | P38927 |
| F | — | protein | 466 | — | A0A6A5PTG9 |
| G | — | protein | 117 | — | P47110 |
| P | — | dna | 10 | — | — |
| T | — | dna | 14 | — | — |
Ligands and binding sites
- SF4 · Iron/sulfur cluster · ligand · chains A
- DCP · 2'-deoxycytidine-5'-triphosphate · ligand · chains A, P, T
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7S0T · Structure of DNA polymerase zeta with mismatched DNA · the same entry in another collection · chain T against T, TM-score 1.00
- P14284 · AlphaFold monomer V2.0 prediction for DNA polymerase zeta catalytic subunit (P14284) · a predicted model of the same protein · chain A against A, TM-score 0.97
- P38927 · AlphaFold monomer V2.0 prediction for DNA polymerase zeta processivity subunit (P38927) · a predicted model of the same protein · chain D against A, TM-score 0.96
- P47110 · AlphaFold monomer V2.0 prediction for DNA polymerase delta subunit 3 (P47110) · a predicted model of the same protein · chain G against A, TM-score 0.81
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P14284
- Every structure of UniProt P38927
- Every structure of UniProt A0A6A5PTG9
- Every structure of UniProt P47110
- Elsewhere: RCSB PDB 7S0T · PDBe 7S0T · UniProt P14284 · UniProt P38927 · UniProt A0A6A5PTG9 · UniProt P47110
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