MolNFT v1 · #186364 · protein + DNA
Human DNA polymerase beta crosslinked complex, 60 S ca to mn exchange
7RBM: “Human DNA polymerase beta crosslinked complex, 60 S ca to mn exchange”. X-ray diffraction, 3 ligands (QPJ, PPV, MN). MolNFT v1 #186364 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7RBM
- Type
- protein + DNA
- Length
- 357 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P06746
- Ligands
- QPJ, PPV, MN
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 325 | — | P06746 |
| D | — | dna | 5 | — | — |
| P | — | dna | 11 | — | — |
| T | — | dna | 16 | — | — |
Ligands and binding sites
- QPJ · 2-deoxy-3,5-di-O-phosphono-D-erythro-pentitol · ligand · chains A, D
- PPV · Pyrophosphate · ligand · chains A, P
- MN · Manganese (II) ion · metal · 11 copies · chains A, P, D, T
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7RBM · Human DNA polymerase beta crosslinked complex, 60 s Ca to Mn exchange · the same entry in another collection · chain A against A, TM-score 1.00
- P06746 · AlphaFold monomer V2.0 prediction for DNA polymerase beta (P06746) · a predicted model of the same protein · chain A against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P06746
- Elsewhere: RCSB PDB 7RBM · PDBe 7RBM · UniProt P06746
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