MolNFT v1 · #186008 · protein
Crystal structure of myorg bound to 1-deoxygalactonojirimycin
7QQG: “Crystal structure of myorg bound to 1-deoxygalactonojirimycin”. X-ray diffraction, 3 ligands (DGJ, NAG, FUC). MolNFT v1 #186008 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7QQG
- Type
- protein
- Length
- 2,351 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q6NSJ0
- Ligands
- DGJ, NAG, FUC
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 618 | — | Q6NSJ0 |
| B | — | protein | 623 | — | Q6NSJ0 |
| C | — | protein | 614 | — | Q6NSJ0 |
| D | — | protein | 496 | — | Q6NSJ0 |
Ligands and binding sites
- DGJ · (2R,3S,4R,5S)-2-(hydroxymethyl)piperidine-3,4,5-triol · ligand · 4 copies · chains A, B, C, D
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 24 copies · chains A, B, C, D
- FUC · alpha-L-fucopyranose · sugar · chains A
- MLI · Malonate ion · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7QQG · Crystal structure of MYORG bound to 1-deoxygalactonojirimycin · the same entry in another collection · chain D against D, TM-score 1.00
- Q6NSJ0 · AlphaFold monomer V2.0 prediction for myogenesis-regulating glycosidase (Q6NSJ0) · a predicted model of the same protein · chain D against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6NSJ0
- Elsewhere: RCSB PDB 7QQG · PDBe 7QQG · UniProt Q6NSJ0
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