MolNFT v1 · #185977 · protein
26S proteasome wt-UBP6-ubvs complex in the si state (atpases, RPN1, UBP6, and ubvs)
7QO4: “26S proteasome wt-UBP6-ubvs complex in the si state (atpases, RPN1, UBP6, and ubvs)”. Electron microscopy, 3 ligands (ATP, ADP, MG). MolNFT v1 #185977 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7QO4
- Type
- protein
- Length
- 3,737 residues
- Chains
- 9
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P38764, A0A6A5PV22, A0A6A5Q382, A0A6A5PYF7, A0A6A5Q8D3, A0A6A5Q672, A0A6A5PWS2, A0A6A5PXS0, J3QS39
- Ligands
- ATP, ADP, MG
Structure
electron microscopy · 9 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| Z | — | protein | 906 | — | P38764 |
| H | — | protein | 391 | — | A0A6A5PV22 |
| I | — | protein | 384 | — | A0A6A5Q382 |
| K | — | protein | 394 | — | A0A6A5PYF7 |
| L | — | protein | 388 | — | A0A6A5Q8D3 |
| M | — | protein | 421 | — | A0A6A5Q672 |
| J | — | protein | 405 | — | A0A6A5PWS2 |
| 8 | — | protein | 372 | — | A0A6A5PXS0 |
| 9 | — | protein | 76 | — | J3QS39 |
Ligands and binding sites
- ATP · Adenosine-5'-triphosphate · ligand · 5 copies · chains H, I, J, K, L, M
- ADP · Adenosine-5'-diphosphate · ligand · chains J
- MG · Magnesium ion · metal · 6 copies · chains H, J, K, L, M
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7QO4 · 26S proteasome WT-Ubp6-UbVS complex in the si state (ATPases, Rpn1, Ubp6, and UbVS) · the same entry in another collection · chain 9 against 9, TM-score 1.00
- P38764 · AlphaFold monomer V2.0 prediction for 26S proteasome regulatory subunit RPN1 (P38764) · a predicted model of the same protein · chain Z against A, TM-score 0.83
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P38764
- Every structure of UniProt A0A6A5PV22
- Every structure of UniProt A0A6A5Q382
- Every structure of UniProt A0A6A5PYF7
- Every structure of UniProt A0A6A5Q8D3
- Every structure of UniProt A0A6A5Q672
- Every structure of UniProt A0A6A5PWS2
- Every structure of UniProt A0A6A5PXS0
- Every structure of UniProt J3QS39
- Elsewhere: RCSB PDB 7QO4 · PDBe 7QO4 · UniProt P38764 · UniProt A0A6A5PV22 · UniProt A0A6A5Q382 · UniProt A0A6A5PYF7 · UniProt A0A6A5Q8D3 · UniProt A0A6A5Q672 · UniProt A0A6A5PWS2 · UniProt A0A6A5PXS0 · UniProt J3QS39
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.