MolNFT v1 · #184754 · protein
Structure of kdnase from aspergillus terrerus in complex with 2-keto- 3-deoxynononic acid
7P1D: “Structure of kdnase from aspergillus terrerus in complex with 2-keto- 3-deoxynononic acid”. X-ray diffraction, 3 ligands (KDM, SNN, CA). MolNFT v1 #184754 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7P1D
- Type
- protein
- Length
- 383 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q0CMX0
- Ligands
- KDM, SNN, CA
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 383 | — | Q0CMX0 |
Ligands and binding sites
- KDM · deamino-alpha-neuraminic acid · ligand · 2 copies · chains A
- SNN · L-3-aminosuccinimide · ligand · chains A
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7P1D · Structure of KDNase from Aspergillus Terrerus in complex with 2-keto-3-deoxynononic acid · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q0CMX0
- Elsewhere: RCSB PDB 7P1D · PDBe 7P1D · UniProt Q0CMX0
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