Ligand · KDM
KDM · deamino-alpha-neuraminic acid
KDM, deamino-alpha-neuraminic acid (C9 H16 O9, 268.2 g/mol), in the MolNFT structures on GenesisL1: bound in 8 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found…
- Component
- KDM
- Formula
- C9 H16 O9
- Class
- ligand
- Structures
- 8
- PDB entries
- 4
Binding sites
KDM in 8 structures; the first of them:
- 7P1D · Structure of KDNase from Aspergillus Terrerus in complex with 2-keto-3-deoxynononic acid · KDM A501 · binds ARG56, ILE57, ARG75, ASP81, GLN144, TRP198, ALA244, GLU245 and 3 more
- 7P1O · Structure of KDNase from Aspergillus Terrerus in complex with 2-keto-3-deoxynononic acid · KDM X502 · binds ARG56, ILE57, ARG75, ASP81, GLN144, TRP198, ALA244, GLU245 and 3 more
- 7P1Q · Structure of KDNase from Trichophyton Rubrum in complex with 2-keto-3-deoxynononic acid · KDM A501 · binds ARG62, ILE63, ARG81, ASP87, GLN150, ARG173, TRP204, SER250 and 4 more
- 7P1U · Structure of KDNase from Trichophyton Rubrum in complex with 2-keto-3-deoxynononic acid · KDM A501 · binds ARG62, ILE63, ARG81, ASP87, ASN127, GLN150, ARG173, TRP204 and 5 more
- 7P1D · Structure of kdnase from aspergillus terrerus in complex with 2-keto- 3-deoxynononic acid · KDM A501 · binds ARG56, ARG75, ASP81, GLN144, TRP198, GLU245, ARG261, ARG319 and 1 more
- 7P1O · Structure of kdnase from aspergillus terrerus in complex with 2-keto- 3-deoxynononic acid · KDM X502 · binds ARG56, ILE57, ARG75, ASP81, GLN144, TRP198, GLU245, ARG261 and 2 more
- 7P1Q · Structure of kdnase from trichophyton rubrum in complex with 2-keto-3- deoxynononic acid · KDM A501 · binds ARG62, ILE63, ARG81, ASP87, GLN150, TRP204, GLU251, ARG267 and 2 more
- 7P1U · Structure of kdnase from trichophyton rubrum in complex with 2-keto-3- deoxynononic acid · KDM A501 · binds ARG62, ILE63, ARG81, ASP87, GLN150, TRP204, GLU251, ARG267 and 2 more
Residues it binds most
ARG 18, ASP 18, TYR 16, GLU 15, GLN 12, TRP 12, ILE 11, ASN 6, GLY 4, ALA 5 (residue and the binding sites it lines).
Found with
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