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MolNFT v1 · #184732 · protein

F(M197)H mutant structure of photosynthetic reaction center from rhodobacter sphaeroides strain rv by fixed-target serial synchrotron crystallography (100K, 26KEV)

7P0Q: “F(M197)H mutant structure of photosynthetic reaction center from rhodobacter sphaeroides strain rv by…”. X-ray diffraction, 7 ligands (UNL, BCL, BPH). MolNFT v1 #184732 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
7P0Q
Type
protein
Length
824 residues
Chains
3
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P0C0Y7, P0C0Y8, P0C0Y9
Ligands
UNL, BCL, BPH, NKP, U10, SPN, FE

Structure

x-ray diffraction · 3 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
H—protein241—P0C0Y7
L—protein281—P0C0Y8
M—protein302—P0C0Y9

Ligands and binding sites

  • UNL · Unknown ligand · ligand · 7 copies · chains H, L, M
  • BCL · Bacteriochlorophyll A · ligand · 4 copies · chains L, M
  • BPH · Bacteriopheophytin A · ligand · 2 copies · chains L, M
  • NKP · (2R)-2-hydroxy-3-(phosphonooxy)propyl (9E)-octadec-9-enoate · ligand · 2 copies · chains H, L, M
  • U10 · Ubiquinone-10 · ligand · chains L, M
  • SPN · Speroidenone · ligand · chains M
  • FE · Fe (III) ion · metal · chains L, M
  • LDA · Lauryl dimethylamine-N-oxide · additive · 4 copies · chains H, M
  • OLC · (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · additive · chains L
  • EDO · 1,2-ethanediol · additive · chains H, M

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 7P0Q · F(M197)H mutant structure of Photosynthetic Reaction Center From Rhodobacter Sphaeroides… · the same entry in another collection · chain H against H, TM-score 1.00

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