MolNFT v1 · #184726 · protein
Crystal structure of S.POMBE MDB1 brct domains
7P0J · DNA damage response protein MDB1: “Crystal structure of S.POMBE MDB1 brct domains”. X-ray diffraction, 2 ligands (NA, MG), 1 pocket (best druggability 0.39). MolNFT v1 #184726 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 7P0J
- Type
- protein
- Length
- 195 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA damage response protein MDB1
- UniProt
- O14079
- Ligands
- NA, MG
- Pockets
- 1 · best druggability 0.39
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA damage response protein MDB1 | protein | 195 | 42% helix, 14% strand | O14079 |
Ligands and binding sites
- NA · Sodium ion · metal · 2 copies · chains A
- MG · Magnesium ion · metal · chains A
- CIT · Citric acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 100 | 0.39 | 0.76 | 15 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O14079
- Elsewhere: RCSB PDB 7P0J · PDBe 7P0J · UniProt O14079
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