MolNFT v1 · #184244 · protein
Crystal structure of the covalent complex between tribolium castaneum deubiquitinase zup and ubiquitin-pa
7OJE: “Crystal structure of the covalent complex between tribolium castaneum deubiquitinase zup and ubiquitin-pa”. X-ray diffraction, 3 ligands (AYE, NA, ZN). MolNFT v1 #184244 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7OJE
- Type
- protein
- Length
- 876 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- D6WWN1, P0CG47
- Ligands
- AYE, NA, ZN
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 365 | — | D6WWN1 |
| B, D | — | protein | 75 | — | P0CG47 |
| C | — | protein | 361 | — | D6WWN1 |
Ligands and binding sites
- AYE · prop-2-en-1-amine · ligand · 2 copies · chains A, B, C, D
- NA · Sodium ion · metal · 3 copies · chains A, C
- ZN · Zinc ion · metal · 2 copies · chains A, C
- EDO · 1,2-ethanediol · additive · 4 copies · chains A, B, C, D
- CIT · Citric acid · additive · 2 copies · chains A, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7OJE · Crystal structure of the covalent complex between Tribolium castaneum deubiquitinase ZUP… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D6WWN1
- Every structure of UniProt P0CG47
- Elsewhere: RCSB PDB 7OJE · PDBe 7OJE · UniProt D6WWN1 · UniProt P0CG47
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.