MolNFT v1 · #184164 · protein
Crystal structure of pseudoalteromonas luteoviolacea L-amino acid oxidase
7OG2 · Amine oxidoreductase: “Crystal structure of pseudoalteromonas luteoviolacea L-amino acid oxidase”. X-ray diffraction, 3 ligands (FAD, PT, CL), 19 pockets (best druggability 0.89). MolNFT v1 #184164 on GenesisL1: 3D structure…
- PDB
- 7OG2
- Type
- protein
- Length
- 1,232 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Amine oxidoreductase
- UniProt
- A0A166WMK8
- Ligands
- FAD, PT, CL
- Pockets
- 19 · best druggability 0.89
Structure
x-ray diffraction · 2 distinct chains · 40% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Amine oxidoreductase | protein | 622 | 40% helix, 21% strand | A0A166WMK8 |
| B | Amine oxidoreductase | protein | 610 | 40% helix, 21% strand | A0A166WMK8 |
Ligands and binding sites
- FAD · Flavin-adenine dinucleotide · ligand · 2 copies · chains A, B
- PT · Platinum (II) ion · metal · chains A, B
- CL · Chloride ion · ion · 7 copies · chains A, B
- GOL · Glycerol · additive · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
19 pockets found on a 1 Å grid, 10 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1019 | 0.89 | 0.90 | 119 | FAD, GOL, CL |
| 2 | 777 | 0.89 | 0.92 | 102 | FAD |
| 3 | 121 | 0.80 | 0.98 | 19 | empty |
| 4 | 198 | 0.79 | 0.93 | 31 | empty |
| 5 | 334 | 0.78 | 0.88 | 45 | empty |
Interfaces
1 interface between chains.
- A–B · 2258 Ų buried · 36 hydrogen bonds · protein-protein
Compared structures
- 7OG2 · Crystal structure of Pseudoalteromonas luteoviolacea L-amino acid oxidase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A166WMK8
- Elsewhere: RCSB PDB 7OG2 · PDBe 7OG2 · UniProt A0A166WMK8
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