MolNFT v1 · #183437 · protein
Crystal structure of MINDY2 (C266A) in complex with LYS48-linked penta-ubiquitin (K48-UB5)
7NPI: “Crystal structure of MINDY2 (C266A) in complex with LYS48-linked penta-ubiquitin (K48-UB5)”. X-ray diffraction, 2 ligands (NA, CL). MolNFT v1 #183437 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7NPI
- Type
- protein
- Length
- 4,455 residues
- Chains
- 42
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q8NBR6, P0CG48
- Ligands
- NA, CL
Structure
x-ray diffraction · 8 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, G | — | protein | 262 | — | Q8NBR6 |
| B, H, N, T, Z, c, f, i, l | — | protein | 73 | — | P0CG48 |
| C, D, F, I, J, L, O, P, R, U, V, X, a, b, d, g, h, j, m, p | — | protein | 76 | — | P0CG48 |
| E, n | — | protein | 75 | — | P0CG48 |
| K | — | protein | 74 | — | P0CG48 |
| M, S, Y, e, k | — | protein | 263 | — | Q8NBR6 |
| Q | — | protein | 71 | — | P0CG48 |
| W, o | — | protein | 72 | — | P0CG48 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7NPI · Crystal structure of Mindy2 (C266A) in complex with Lys48-linked penta-ubiquitin (K48-Ub5) · the same entry in another collection · chain K against K, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8NBR6
- Every structure of UniProt P0CG48
- Elsewhere: RCSB PDB 7NPI · PDBe 7NPI · UniProt Q8NBR6 · UniProt P0CG48
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