MolNFT v1 · #182004 · protein
BG505 SOSIP.V5.2 in complex with the monoclonal antibody RH4O9.8 (as Fab fragment)
7MDT: “BG505 SOSIP.V5.2 in complex with the monoclonal antibody RH4O9.8 (as Fab fragment)”. Electron microscopy, 3 ligands (NAG, BMA, MAN). MolNFT v1 #182004 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7MDT
- Type
- protein
- Length
- 1,892 residues
- Chains
- 8
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q2N0S6
- Ligands
- NAG, BMA, MAN
Structure
electron microscopy · 8 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 439 | — | Q2N0S6 |
| B | — | protein | 122 | — | Q2N0S6 |
| L | — | protein | 110 | — | — |
| H | — | protein | 117 | — | — |
| C | — | protein | 428 | — | Q2N0S6 |
| E | — | protein | 433 | — | Q2N0S6 |
| D | — | protein | 122 | — | Q2N0S6 |
| F | — | protein | 121 | — | Q2N0S6 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 71 copies · chains A, L, H, C, E, B, D, F
- BMA · beta-D-mannopyranose · sugar · 4 copies
- MAN · alpha-D-mannopyranose · sugar · 3 copies
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7MDT · BG505 SOSIP.v5.2 in complex with the monoclonal antibody Rh4O9.8 (as Fab fragment) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2N0S6
- Elsewhere: RCSB PDB 7MDT · PDBe 7MDT · UniProt Q2N0S6
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