Research workbench
BG505 SOSIP.V5.2 in complex with the monoclonal antibody RH4O9.8 (as Fab fragment)
Analyse BG505 SOSIP.V5.2 in complex with the monoclonal antibody RH4O9.8 (as Fab… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7MDT
- Type
- protein
- Length
- 1,892 residues
- Chains
- 8
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q2N0S6
- Ligands
- NAG, BMA, MAN
Structure
electron microscopy · 8 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 439 | — | Q2N0S6 |
| B | — | protein | 122 | — | Q2N0S6 |
| L | — | protein | 110 | — | — |
| H | — | protein | 117 | — | — |
| C | — | protein | 428 | — | Q2N0S6 |
| E | — | protein | 433 | — | Q2N0S6 |
| D | — | protein | 122 | — | Q2N0S6 |
| F | — | protein | 121 | — | Q2N0S6 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 71 copies · chains A, L, H, C, E, B, D, F
- BMA · beta-D-mannopyranose · sugar · 4 copies
- MAN · alpha-D-mannopyranose · sugar · 3 copies
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7MDT · BG505 SOSIP.v5.2 in complex with the monoclonal antibody Rh4O9.8 (as Fab fragment) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2N0S6
- Elsewhere: RCSB PDB 7MDT · PDBe 7MDT · UniProt Q2N0S6
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