MolNFT v1 · #181759 · protein + RNA
A. baumannii ribosome-eravacycline complex: 30S
7M4U: “A. baumannii ribosome-eravacycline complex: 30S”. Electron microscopy, 2 ligands (YQM, MG). MolNFT v1 #181759 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7M4U
- Type
- protein + RNA
- Length
- 3,914 residues
- Chains
- 21
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- V5VBC2, V5V9N0, B7IA15, B7IA22, B7IBC1, B7I7S0, B7IA25, V5VBA5, A0A009L7S8, A0A4R0F9S8, B7I7R9, B7IA17, B7IA26, B7I3U0, A0A1V3DIZ9, B7IA30, A0A022IPE7, B7IA35, B7I5N9, A0A0Q7FMS9
- Ligands
- YQM, MG
Structure
electron microscopy · 21 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| a | — | rna | 1528 | — | — |
| b | — | protein | 225 | — | V5VBC2 |
| c | — | protein | 215 | — | V5V9N0 |
| d | — | protein | 207 | — | B7IA15 |
| e | — | protein | 155 | — | B7IA22 |
| f | — | protein | 104 | — | B7IBC1 |
| g | — | protein | 141 | — | B7I7S0 |
| h | — | protein | 130 | — | B7IA25 |
| i | — | protein | 124 | — | V5VBA5 |
| j | — | protein | 100 | — | A0A009L7S8 |
| k | — | protein | 117 | — | A0A4R0F9S8 |
| l | — | protein | 122 | — | B7I7R9 |
| m | — | protein | 115 | — | B7IA17 |
| n | — | protein | 100 | — | B7IA26 |
| o | — | protein | 87 | — | B7I3U0 |
| p | — | protein | 83 | — | A0A1V3DIZ9 |
| q | — | protein | 78 | — | B7IA30 |
| r | — | protein | 52 | — | A0A022IPE7 |
| s | — | protein | 82 | — | B7IA35 |
| t | — | protein | 86 | — | B7I5N9 |
| u | — | protein | 63 | — | A0A0Q7FMS9 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- B7IA22 · AlphaFold monomer V2.0 prediction for 30S ribosomal protein S5 (B7IA22) · a predicted model of the same protein · chain e against A, TM-score 0.98
- B7IA15 · AlphaFold monomer V2.0 prediction for 30S ribosomal protein S4 (B7IA15) · a predicted model of the same protein · chain d against A, TM-score 0.98
- B7I7R9 · AlphaFold monomer V2.0 prediction for 30S ribosomal protein S12 (B7I7R9) · a predicted model of the same protein · chain l against A, TM-score 0.97
- B7I7S0 · AlphaFold monomer V2.0 prediction for 30S ribosomal protein S7 (B7I7S0) · a predicted model of the same protein · chain g against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt V5VBC2
- Every structure of UniProt V5V9N0
- Every structure of UniProt B7IA15
- Every structure of UniProt B7IA22
- Every structure of UniProt B7IBC1
- Every structure of UniProt B7I7S0
- Every structure of UniProt B7IA25
- Every structure of UniProt V5VBA5
- Every structure of UniProt A0A009L7S8
- Every structure of UniProt A0A4R0F9S8
- Every structure of UniProt B7I7R9
- Every structure of UniProt B7IA17
- Every structure of UniProt B7IA26
- Every structure of UniProt B7I3U0
- Every structure of UniProt A0A1V3DIZ9
- Every structure of UniProt B7IA30
- Every structure of UniProt A0A022IPE7
- Every structure of UniProt B7IA35
- Every structure of UniProt B7I5N9
- Every structure of UniProt A0A0Q7FMS9
- Elsewhere: RCSB PDB 7M4U · PDBe 7M4U · UniProt V5VBC2 · UniProt V5V9N0 · UniProt B7IA15 · UniProt B7IA22 · UniProt B7IBC1 · UniProt B7I7S0 · UniProt B7IA25 · UniProt V5VBA5 · UniProt A0A009L7S8 · UniProt A0A4R0F9S8 · UniProt B7I7R9 · UniProt B7IA17 · UniProt B7IA26 · UniProt B7I3U0 · UniProt A0A1V3DIZ9 · UniProt B7IA30 · UniProt A0A022IPE7 · UniProt B7IA35 · UniProt B7I5N9 · UniProt A0A0Q7FMS9
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