Research workbench

A. baumannii ribosome-eravacycline complex: 30S

Analyse A. baumannii ribosome-eravacycline complex: 30S in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7M4U
Type: protein + RNA
Length: 3,914 residues
Chains: 21
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: V5VBC2, V5V9N0, B7IA15, B7IA22, B7IBC1, B7I7S0, B7IA25, V5VBA5, A0A009L7S8, A0A4R0F9S8, B7I7R9, B7IA17, B7IA26, B7I3U0, A0A1V3DIZ9, B7IA30, A0A022IPE7, B7IA35, B7I5N9, A0A0Q7FMS9
Ligands: YQM, MG

Structure

electron microscopy · 21 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
a	—	rna	1528	—	—
b	—	protein	225	—	V5VBC2
c	—	protein	215	—	V5V9N0
d	—	protein	207	—	B7IA15
e	—	protein	155	—	B7IA22
f	—	protein	104	—	B7IBC1
g	—	protein	141	—	B7I7S0
h	—	protein	130	—	B7IA25
i	—	protein	124	—	V5VBA5
j	—	protein	100	—	A0A009L7S8
k	—	protein	117	—	A0A4R0F9S8
l	—	protein	122	—	B7I7R9
m	—	protein	115	—	B7IA17
n	—	protein	100	—	B7IA26
o	—	protein	87	—	B7I3U0
p	—	protein	83	—	A0A1V3DIZ9
q	—	protein	78	—	B7IA30
r	—	protein	52	—	A0A022IPE7
s	—	protein	82	—	B7IA35
t	—	protein	86	—	B7I5N9
u	—	protein	63	—	A0A0Q7FMS9

Ligands and binding sites

YQM · Eravacycline · ligand · chains a
MG · Magnesium ion · metal · 83 copies · chains a, t, s, n, e

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7M4U · A. baumannii Ribosome-Eravacycline complex: 30S · the same entry in another collection · chain k against k, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt V5VBC2
Every structure of UniProt V5V9N0
Every structure of UniProt B7IA15
Every structure of UniProt B7IA22
Every structure of UniProt B7IBC1
Every structure of UniProt B7I7S0
Every structure of UniProt B7IA25
Every structure of UniProt V5VBA5
Every structure of UniProt A0A009L7S8
Every structure of UniProt A0A4R0F9S8
Every structure of UniProt B7I7R9
Every structure of UniProt B7IA17
Every structure of UniProt B7IA26
Every structure of UniProt B7I3U0
Every structure of UniProt A0A1V3DIZ9
Every structure of UniProt B7IA30
Every structure of UniProt A0A022IPE7
Every structure of UniProt B7IA35
Every structure of UniProt B7I5N9
Every structure of UniProt A0A0Q7FMS9
Elsewhere: RCSB PDB 7M4U · PDBe 7M4U · UniProt V5VBC2 · UniProt V5V9N0 · UniProt B7IA15 · UniProt B7IA22 · UniProt B7IBC1 · UniProt B7I7S0 · UniProt B7IA25 · UniProt V5VBA5 · UniProt A0A009L7S8 · UniProt A0A4R0F9S8 · UniProt B7I7R9 · UniProt B7IA17 · UniProt B7IA26 · UniProt B7I3U0 · UniProt A0A1V3DIZ9 · UniProt B7IA30 · UniProt A0A022IPE7 · UniProt B7IA35 · UniProt B7I5N9 · UniProt A0A0Q7FMS9

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