MolNFT v1 · #181555 · protein
Crystal structure of ebola zaire envelope glycoprotein gp in complex with compound ARN0075146
7LYD: “Crystal structure of ebola zaire envelope glycoprotein gp in complex with compound ARN0075146”. X-ray diffraction, 4 ligands (YOD, NAG, MAN). MolNFT v1 #181555 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7LYD
- Type
- protein
- Length
- 368 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q05320
- Ligands
- YOD, NAG, MAN, BMA
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 240 | — | Q05320 |
| B | — | protein | 128 | — | Q05320 |
Ligands and binding sites
- YOD · (1R,3S,5S,7S)-N-[(1r,4R)-4-aminocyclohexyl]-3-[(methylsulfanyl)methyl]-5-phenyladamantane-1-carboxamide · ligand · chains A, B
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 6 copies · chains A, B
- MAN · alpha-D-mannopyranose · sugar · 2 copies · chains A
- BMA · beta-D-mannopyranose · sugar
- GOL · Glycerol · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7LYD · Crystal Structure of Ebola zaire Envelope glycoprotein GP in complex with compound… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q05320
- Elsewhere: RCSB PDB 7LYD · PDBe 7LYD · UniProt Q05320
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