MolNFT v1 · #181550 · protein
The internal aldimine form of the wild-type salmonella typhimurium tryptophan synthase in complex with two molecules of N-(4'- trifluoromethoxybenzoyl)-2-amino-1-ethylphosphate (F6F) inhibitor at the enzyme alpha-site, a single F6F molecule at the enzyme beta-site, and sodium ion at the metal coordination site at 1.55 ångström resolution. one of the beta-Q114 rotamer conformations allows a hydrogen bond to form with the plp oxygen at the position 3 in the ring
7LY8: “The internal aldimine form of the wild-type salmonella typhimurium tryptophan synthase in complex with two…”. X-ray diffraction, 4 ligands (F6F, PLP, NA). MolNFT v1 #181550 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 7LY8
- Type
- protein
- Length
- 646 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P00929, P0A2K1
- Ligands
- F6F, PLP, NA, CL
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 253 | — | P00929 |
| B | — | protein | 393 | — | P0A2K1 |
Ligands and binding sites
- F6F · 2-{[4-(trifluoromethoxy)benzoyl]amino}ethyl dihydrogen phosphate · ligand · 3 copies · chains A, B
- PLP · Pyridoxal-5'-phosphate · ligand · chains B
- NA · Sodium ion · metal · chains B
- CL · Chloride ion · ion · 5 copies · chains B
- EDO · 1,2-ethanediol · additive · 4 copies · chains B
- PEG · Di(hydroxyethyl)ether · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7LY8 · The internal aldimine form of the wild-type Salmonella Typhimurium Tryptophan Synthase in… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00929
- Every structure of UniProt P0A2K1
- Elsewhere: RCSB PDB 7LY8 · PDBe 7LY8 · UniProt P00929 · UniProt P0A2K1
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.