MolNFT v1 · #181123 · protein
Cryo-EM structure of BG505 ds-sosip in complex with GLYCAN276- dependent broadly neutralizing antibody VRC33.01 Fab
7LL2: “Cryo-EM structure of BG505 ds-sosip in complex with GLYCAN276- dependent broadly neutralizing antibody…”. Electron microscopy, 3 ligands (NAG, BMA, MAN). MolNFT v1 #181123 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 7LL2
- Type
- protein
- Length
- 3,060 residues
- Chains
- 12
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q2N0S6, Q2N0S7
- Ligands
- NAG, BMA, MAN
Structure
electron microscopy · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, E | — | protein | 447 | — | Q2N0S6 |
| B, D, F | — | protein | 136 | — | Q2N0S7 |
| H, I, K | — | protein | 220 | — | — |
| L, J, M | — | protein | 217 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 78 copies · chains A, B, E, H, C, D, I, F, K
- BMA · beta-D-mannopyranose · sugar · 30 copies · chains H, I, K
- MAN · alpha-D-mannopyranose · sugar · 24 copies · chains H, L, I, J, K, M
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7LL2 · Cryo-EM structure of BG505 DS-SOSIP in complex with Glycan276-Dependent Broadly… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2N0S6
- Every structure of UniProt Q2N0S7
- Elsewhere: RCSB PDB 7LL2 · PDBe 7LL2 · UniProt Q2N0S6 · UniProt Q2N0S7
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