MolNFT v1 · #180731 · protein
Crystal structure of human ARH3 bound to calcium and ADP-ribose
7L9F: “Crystal structure of human ARH3 bound to calcium and ADP-ribose”. X-ray diffraction, 2 ligands (AR6, CA). MolNFT v1 #180731 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7L9F
- Type
- protein
- Length
- 1,340 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9NX46
- Ligands
- AR6, CA
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C | — | protein | 336 | — | Q9NX46 |
| D | — | protein | 337 | — | Q9NX46 |
| A | — | protein | 335 | — | Q9NX46 |
| B | — | protein | 332 | — | Q9NX46 |
Ligands and binding sites
- AR6 · [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [hydroxy-[[(2R,3S,4R,5S)-3,4,5-trihydroxyoxolan-2-yl]methoxy]phosphoryl] hydrogen phosphate · ligand · 4 copies · chains C, D, A, B
- CA · Calcium ion · metal · 8 copies · chains C, D, A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7L9F · Crystal structure of human ARH3 bound to calcium and ADP-ribose · the same entry in another collection · chain B against B, TM-score 1.00
- Q9NX46 · AlphaFold monomer V2.0 prediction for ADP-ribose glycohydrolase ARH3 (Q9NX46) · a predicted model of the same protein · chain C against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9NX46
- Elsewhere: RCSB PDB 7L9F · PDBe 7L9F · UniProt Q9NX46
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