MolNFT v1 · #180527 · protein

Cryo-EM structure of full-length TRPV1 at PH6C state

7L2J: “Cryo-EM structure of full-length TRPV1 at PH6C state”. Electron microscopy, 1 ligand (XJ7). MolNFT v1 #180527 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7L2J
Type: protein
Length: 2,116 residues
Chains: 4
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: O35433
Ligands: XJ7

Structure

electron microscopy · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D	—	protein	529	—	O35433

Ligands and binding sites

XJ7 · (2S)-1-(butanoyloxy)-3-{[(R)-hydroxy{[(1r,2r,3s,4s,5r, 6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propan-2-yl tridecanoate · ligand · 4 copies · chains A, B, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7L2J · Cryo-EM structure of full-length TRPV1 at pH6c state · the same entry in another collection · chain A against A, TM-score 1.00
O35433 · AlphaFold monomer V2.0 prediction for transient receptor potential cation channel… · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O35433
Elsewhere: RCSB PDB 7L2J · PDBe 7L2J · UniProt O35433

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