MolNFT v1 · #179569 · protein
Co-crystal structure of alpha glucosidase with compound 2
7K9N: “Co-crystal structure of alpha glucosidase with compound 2”. X-ray diffraction, 3 ligands (W9G, CA, SO4). MolNFT v1 #179569 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7K9N
- Type
- protein
- Length
- 1,883 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A1A4T2, O08795
- Ligands
- W9G, CA, SO4
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 853 | — | A1A4T2 |
| B, D | — | protein | 87 | — | O08795 |
| C | — | protein | 856 | — | A1A4T2 |
Ligands and binding sites
- W9G · (1S,2S,3R,4S,5S)-1-(hydroxymethyl)-5-[(9-methoxynonyl) amino]cyclohexane-1,2,3,4-tetrol · ligand · 2 copies · chains A, C
- CA · Calcium ion · metal · 4 copies · chains B, D
- SO4 · Sulfate ion · ion · 8 copies · chains A, C
- EDO · 1,2-ethanediol · additive · 28 copies · chains A, B, C, D
- PEG · Di(hydroxyethyl)ether · additive · 8 copies · chains A, B, C, D
- PGE · Triethylene glycol · additive · 4 copies · chains A, B
- PG4 · Tetraethylene glycol · additive · 3 copies · chains A, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A1A4T2
- Every structure of UniProt O08795
- Elsewhere: RCSB PDB 7K9N · PDBe 7K9N · UniProt A1A4T2 · UniProt O08795
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