MolNFT v1 · #178981 · protein
Plant mitochondrial complex IV from vigna radiata
7JRO: “Plant mitochondrial complex IV from vigna radiata”. Electron microscopy, 8 ligands (3PE, HEA, PC1). MolNFT v1 #178981 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7JRO
- Type
- protein
- Length
- 1,492 residues
- Chains
- 10
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A1S3TZB2, A0A1S3TNX9, A0A1S3U1E4, A0A1S3UMA0, A0A1S3VV60, A0A1S3V319, A0A1S3TUX2, A0A1S3V7C2
- Ligands
- 3PE, HEA, PC1, CDL, CUA, CU, MG, ZN
Structure
electron microscopy · 10 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| a | — | protein | 524 | — | — |
| b | — | protein | 239 | — | A0A1S3TZB2 |
| c | — | protein | 265 | — | — |
| d | — | protein | 76 | — | A0A1S3TNX9 |
| e | — | protein | 94 | — | A0A1S3U1E4 |
| f | — | protein | 59 | — | A0A1S3UMA0 |
| g | — | protein | 74 | — | A0A1S3VV60 |
| h | — | protein | 49 | — | A0A1S3V319 |
| i | — | protein | 65 | — | A0A1S3TUX2 |
| j | — | protein | 47 | — | A0A1S3V7C2 |
Ligands and binding sites
- 3PE · 1,2-diacyl-sn-glycero-3-phosphoethanolamine · ligand · 17 copies · chains a, c, d, j, f, b, h, i
- HEA · Heme-A · ligand · 2 copies · chains a, b
- PC1 · 1,2-diacyl-sn-glycero-3-phosphocholine · ligand · 2 copies · chains a, c, i, j
- CDL · Cardiolipin · ligand · chains a, j
- CUA · Dinuclear copper ion · ligand · chains b
- CU · Copper (II) ion · metal · chains a
- MG · Magnesium ion · metal · chains a, b
- ZN · Zinc ion · metal · chains e
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7JRO · Plant Mitochondrial complex IV from Vigna radiata · the same entry in another collection · chain j against j, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1S3TZB2
- Every structure of UniProt A0A1S3TNX9
- Every structure of UniProt A0A1S3U1E4
- Every structure of UniProt A0A1S3UMA0
- Every structure of UniProt A0A1S3VV60
- Every structure of UniProt A0A1S3V319
- Every structure of UniProt A0A1S3TUX2
- Every structure of UniProt A0A1S3V7C2
- Elsewhere: RCSB PDB 7JRO · PDBe 7JRO · UniProt A0A1S3TZB2 · UniProt A0A1S3TNX9 · UniProt A0A1S3U1E4 · UniProt A0A1S3UMA0 · UniProt A0A1S3VV60 · UniProt A0A1S3V319 · UniProt A0A1S3TUX2 · UniProt A0A1S3V7C2
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