MolNFT v1 · #178257 · protein
Toxoplasma gondii prolyl-tRNA synthetase (tgprs) in complex with inhibitor T35 and halofuginone
7F9V: “Toxoplasma gondii prolyl-tRNA synthetase (tgprs) in complex with inhibitor T35 and halofuginone”. X-ray diffraction, 5 ligands (1TI, HFG, IOD). MolNFT v1 #178257 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7F9V
- Type
- protein
- Length
- 955 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A7J6JUK2
- Ligands
- 1TI, HFG, IOD, BR, F
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 479 | — | A0A7J6JUK2 |
| B | — | protein | 476 | — | A0A7J6JUK2 |
Ligands and binding sites
- 1TI · 4-[(3S)-3-cyano-3-(1-methylcyclopropyl)-2-oxidanylidene-pyrrolidin-1-yl]-N-[[3-fluoranyl-5-(1-methylpyrazol-4-yl)phenyl]methyl]-6-methyl-pyridine-2-carboxamide · ligand · 2 copies · chains A, B
- HFG · 7-bromo-6-chloro-3-{3-[(2R,3S)-3-hydroxypiperidin-2-yl]-2-oxopropyl}quinazolin-4(3H)-one · ligand · 2 copies · chains A, B
- IOD · Iodide ion · ion · 10 copies · chains A, B
- BR · Bromide ion · ion · 6 copies · chains A, B
- F · Fluoride ion · ion · 3 copies · chains A, B
- MES · 2-(N-morpholino)-ethanesulfonic acid · additive · chains A, B
- BME · Beta-mercaptoethanol · additive · chains A
- GOL · Glycerol · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7F9V · Toxoplasma gondii Prolyl-tRNA Synthetase (TgPRS) in Complex with inhibitor T35 and… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A7J6JUK2
- Elsewhere: RCSB PDB 7F9V · PDBe 7F9V · UniProt A0A7J6JUK2
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