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Toxoplasma gondii prolyl-tRNA synthetase (tgprs) in complex with inhibitor T35 and halofuginone

Analyse Toxoplasma gondii prolyl-tRNA synthetase (tgprs) in complex with inhibitor T35… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
7F9V
Type
protein
Length
955 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
A0A7J6JUK2
Ligands
1TI, HFG, IOD, BR, F

Structure

x-ray diffraction · 2 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein479—A0A7J6JUK2
B—protein476—A0A7J6JUK2

Ligands and binding sites

  • 1TI · 4-[(3S)-3-cyano-3-(1-methylcyclopropyl)-2-oxidanylidene-pyrrolidin-1-yl]-N-[[3-fluoranyl-5-(1-methylpyrazol-4-yl)phenyl]methyl]-6-methyl-pyridine-2-carboxamide · ligand · 2 copies · chains A, B
  • HFG · 7-bromo-6-chloro-3-{3-[(2R,3S)-3-hydroxypiperidin-2-yl]-2-oxopropyl}quinazolin-4(3H)-one · ligand · 2 copies · chains A, B
  • IOD · Iodide ion · ion · 10 copies · chains A, B
  • BR · Bromide ion · ion · 6 copies · chains A, B
  • F · Fluoride ion · ion · 3 copies · chains A, B
  • MES · 2-(N-morpholino)-ethanesulfonic acid · additive · chains A, B
  • BME · Beta-mercaptoethanol · additive · chains A
  • GOL · Glycerol · additive · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 7F9V · Toxoplasma gondii Prolyl-tRNA Synthetase (TgPRS) in Complex with inhibitor T35 and… · the same entry in another collection · chain A against A, TM-score 1.00

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