MolNFT v1 · #178111 · protein + DNA
Crystal structure of replisomal dimer of DNA polymerase from bacteriophage RB69 with DNA duplexes
7F4Y: “Crystal structure of replisomal dimer of DNA polymerase from bacteriophage RB69 with DNA duplexes”. X-ray diffraction, 4 ligands (5GP, DUP, CA). MolNFT v1 #178111 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7F4Y
- Type
- protein + DNA
- Length
- 1,867 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q38087
- Ligands
- 5GP, DUP, CA, MG
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 899 | — | Q38087 |
| T | — | dna | 18 | — | — |
| P, Q | — | dna | 15 | — | — |
| B | — | protein | 901 | — | Q38087 |
| S | — | dna | 19 | — | — |
Ligands and binding sites
- 5GP · Guanosine-5'-monophosphate · ligand · 2 copies · chains A, B
- DUP · 2'-deoxyuridine 5'-alpha,beta-imido-triphosphate · ligand · chains A, T, P
- CA · Calcium ion · metal · 2 copies · chains A, B
- MG · Magnesium ion · metal · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7F4Y · Crystal structure of replisomal dimer of DNA polymerase from bacteriophage RB69 with DNA… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q38087
- Elsewhere: RCSB PDB 7F4Y · PDBe 7F4Y · UniProt Q38087
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