MolNFT v1 · #178053 · protein

Crystal structure of anti S-gatifloxacin antibody Fab fragment in complex with S-gatifloxacin

7F35: “Crystal structure of anti S-gatifloxacin antibody Fab fragment in complex with S-gatifloxacin”. X-ray diffraction, 4 ligands (GFN, NA, SO4). MolNFT v1 #178053 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7F35
Type: protein
Length: 1,229 residues
Chains: 6
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Ligands: GFN, NA, SO4, CL

Structure

x-ray diffraction · 6 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	204	—	—
B	—	protein	212	—	—
C	—	protein	204	—	—
D	—	protein	209	—	—
E	—	protein	189	—	—
F	—	protein	211	—	—

Ligands and binding sites

GFN · 1-cyclopropyl-6-fluoro-8-methoxy-7-[(3S)-3-methylpiperazin-1-yl]-4-oxo-1,4-dihydroquinoline-3-carboxylic acid · ligand · 3 copies · chains A, B, C, D, E, F
NA · Sodium ion · metal · 8 copies · chains A, B, D
SO4 · Sulfate ion · ion · 7 copies · chains B, C, D, F
CL · Chloride ion · ion · chains C
EDO · 1,2-ethanediol · additive · 8 copies · chains A, C, B, F
GOL · Glycerol · additive · 2 copies · chains C
CIT · Citric acid · additive · chains F

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7F35 · Crystal structure of anti S-gatifloxacin antibody Fab fragment in complex with… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 7F35 · PDBe 7F35

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