MolNFT v1 · #177554 · protein
Crystal structure of the PI5P4KBETA N203D-itp complex
7EM6: “Crystal structure of the PI5P4KBETA N203D-itp complex”. X-ray diffraction, 2 ligands (IDP, CZU). MolNFT v1 #177554 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7EM6
- Type
- protein
- Length
- 612 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P78356
- Ligands
- IDP, CZU
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 316 | — | P78356 |
| B | — | protein | 296 | — | P78356 |
Ligands and binding sites
- IDP · Inosine-5'-diphosphate · ligand · 2 copies · chains A, B
- CZU · [[(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-(6-oxidanylidene-1~{H}-purin-9-yl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7EM6 · Crystal structure of the PI5P4Kbeta N203D-ITP complex · the same entry in another collection · chain A against A, TM-score 1.00
- P78356 · AlphaFold monomer V2.0 prediction for phosphatidylinositol 5-phosphate 4-kinase type-2… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P78356
- Elsewhere: RCSB PDB 7EM6 · PDBe 7EM6 · UniProt P78356
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