MolNFT v1 · #177337 · protein

1.70 a cryo-EM structure of streptavidin

7EFC: “1.70 a cryo-EM structure of streptavidin”. Electron microscopy, 1 ligand (BTN), 1 pocket (best druggability 0.47). MolNFT v1 #177337 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7EFC
Type: protein
Length: 120 residues
Chains: 1
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Streptavidin
UniProt: P22629
Ligands: BTN
Pockets: 1 · best druggability 0.47

Structure

electron microscopy · 1 distinct chain · 3% helix, 57% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Streptavidin	protein	120	3% helix, 57% strand	P22629

Ligands and binding sites

BTN · Biotin · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	103	0.47	0.80	20	BTN

Compared structures

7EFC · 1.70 A cryo-EM structure of streptavidin · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P22629
Elsewhere: RCSB PDB 7EFC · PDBe 7EFC · UniProt P22629

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