MolNFT v1 · #176582 · protein

Crystal structure of phosphatidylglycerol phosphate synthase in complex with phosphatidylglycerol phosphate

7DRJ: “Crystal structure of phosphatidylglycerol phosphate synthase in complex with phosphatidylglycerol phosphate”. X-ray diffraction, 2 ligands (PO9, ZN). MolNFT v1 #176582 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7DRJ
Type: protein
Length: 376 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P63756
Ligands: PO9, ZN

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	190	—	P63756
B	—	protein	186	—	P63756

Ligands and binding sites

PO9 · [(2R)-2-hexadecanoyloxy-3-[oxidanyl-[(2S)-2-oxidanyl-3-phosphonooxy-propoxy]phosphoryl]oxy-propyl] (Z)-octadec-9-enoate · ligand · 2 copies · chains A, B
ZN · Zinc ion · metal · 4 copies · chains A, B
BU1 · 1,4-butanediol · additive · 14 copies · chains A, B
OLC · (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · additive · 5 copies · chains A, B
ACY · Acetic acid · additive · 3 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7DRJ · Crystal structure of phosphatidylglycerol phosphate synthase in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
P63756 · AlphaFold monomer V2.0 prediction for cdp-diacylglycerol-- glycerol-3-phosphate… · a predicted model of the same protein · chain A against A, TM-score 0.90

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P63756
Elsewhere: RCSB PDB 7DRJ · PDBe 7DRJ · UniProt P63756

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