MolNFT v1 · #176186 · protein
Crystal structure of yak lactoperoxidase at 1.55 a resolution.
7DE5: “Crystal structure of yak lactoperoxidase at 1.55 a resolution.”. X-ray diffraction, 7 ligands (HEM, NAG, MAN). MolNFT v1 #176186 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7DE5
- Type
- protein
- Length
- 595 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- L8ICE9
- Ligands
- HEM, NAG, MAN, BMA, CA, IOD, SCN
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 595 | — | L8ICE9 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 6 copies · chains A
- MAN · alpha-D-mannopyranose · sugar · 3 copies
- BMA · beta-D-mannopyranose · sugar
- CA · Calcium ion · metal · chains A
- IOD · Iodide ion · ion · 35 copies · chains A
- SCN · Thiocyanate ion · ion · 5 copies · chains A
- EDO · 1,2-ethanediol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7DE5 · Crystal structure of yak lactoperoxidase at 1.55 A resolution. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt L8ICE9
- Elsewhere: RCSB PDB 7DE5 · PDBe 7DE5 · UniProt L8ICE9
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