MolNFT v1 · #175967 · protein
Structure of PKD1L3-CTD/PKD2L1 in apo state
7D7E: “Structure of PKD1L3-CTD/PKD2L1 in apo state”. Electron microscopy, 2 ligands (NAG, CA). MolNFT v1 #175967 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7D7E
- Type
- protein
- Length
- 1,878 residues
- Chains
- 4
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A2A259, Q2EG98
- Ligands
- NAG, CA
Structure
electron microscopy · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | — | protein | 482 | — | A2A259 |
| C | — | protein | 474 | — | A2A259 |
| D | — | protein | 471 | — | A2A259 |
| A | — | protein | 451 | — | Q2EG98 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 10 copies · chains B, C, D, A
- CA · Calcium ion · metal · 3 copies · chains B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7D7E · Structure of PKD1L3-CTD/PKD2L1 in apo state · the same entry in another collection · chain A against A, TM-score 1.00
- A2A259 · AlphaFold monomer V2.0 prediction for polycystic kidney disease 2-like 1 protein (A2A259) · a predicted model of the same protein · chain D against A, TM-score 0.94
- Q2EG98 · AlphaFold monomer V2.0 prediction for polycystic kidney disease protein 1-like 3 (Q2EG98) · a predicted model of the same protein · chain A against A, TM-score 0.87
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A2A259
- Every structure of UniProt Q2EG98
- Elsewhere: RCSB PDB 7D7E · PDBe 7D7E · UniProt A2A259 · UniProt Q2EG98
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.