MolNFT v1 · #175953 · protein
Mycobacterium smegmatis SDH1 in complex with UQ1
7D6V: “Mycobacterium smegmatis SDH1 in complex with UQ1”. Electron microscopy, 6 ligands (FES, FAD, SF4). MolNFT v1 #175953 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7D6V
- Type
- protein
- Length
- 1,104 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A0D6G5S3, A0A0D6G6K3, A0A0D6G6P6
- Ligands
- FES, FAD, SF4, F3S, UQ1, PEV
Structure
electron microscopy · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 601 | — | A0A0D6G5S3 |
| B | — | protein | 239 | — | A0A0D6G6K3 |
| C | — | protein | 264 | — | A0A0D6G6P6 |
Ligands and binding sites
- FES · Fe2/s2 (inorganic) cluster · ligand · 2 copies · chains B, C
- FAD · Flavin-adenine dinucleotide · ligand · chains A
- SF4 · Iron/sulfur cluster · ligand · chains B
- F3S · FE3-S4 cluster · ligand · chains B
- UQ1 · Ubiquinone-1 · ligand · chains B, C
- PEV · (1S)-2-{[(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl stearate · ligand · chains C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7D6V · Mycobacterium smegmatis Sdh1 in complex with UQ1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0D6G5S3
- Every structure of UniProt A0A0D6G6K3
- Every structure of UniProt A0A0D6G6P6
- Elsewhere: RCSB PDB 7D6V · PDBe 7D6V · UniProt A0A0D6G5S3 · UniProt A0A0D6G6K3 · UniProt A0A0D6G6P6
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