MolNFT v1 · #175044 · protein
Structure of ALPHA6BETA1 integrin in complex with laminin-511
7CEC: “Structure of ALPHA6BETA1 integrin in complex with laminin-511”. Electron microscopy, 3 ligands (NAG, CA, MN). MolNFT v1 #175044 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7CEC
- Type
- protein
- Length
- 2,238 residues
- Chains
- 9
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P23229, P05556, O15230, P07942, P11047
- Ligands
- NAG, CA, MN
Structure
electron microscopy · 9 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 553 | — | P23229 |
| B | — | protein | 427 | — | P05556 |
| C | — | protein | 574 | — | O15230 |
| D | — | protein | 47 | — | P07942 |
| E | — | protein | 44 | — | P11047 |
| F | — | protein | 171 | — | — |
| G | — | protein | 160 | — | — |
| H | — | protein | 122 | — | — |
| I | — | protein | 140 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 8 copies · chains C, A, B, G
- CA · Calcium ion · metal · 4 copies · chains A, C
- MN · Manganese (II) ion · metal · 3 copies · chains B, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7CEC · Structure of alpha6beta1 integrin in complex with laminin-511 · the same entry in another collection · chain I against I, TM-score 1.00
- P23229 · AlphaFold monomer V2.0 prediction for integrin alpha-6 (P23229) · a predicted model of the same protein · chain A against A, TM-score 0.96
- P07942 · AlphaFold monomer V2.0 prediction for laminin subunit beta-1 (P07942) · a predicted model of the same protein · chain D against A, TM-score 0.87
- P11047 · AlphaFold monomer V2.0 prediction for laminin subunit gamma-1 (P11047) · a predicted model of the same protein · chain E against A, TM-score 0.72
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P23229
- Every structure of UniProt P05556
- Every structure of UniProt O15230
- Every structure of UniProt P07942
- Every structure of UniProt P11047
- Elsewhere: RCSB PDB 7CEC · PDBe 7CEC · UniProt P23229 · UniProt P05556 · UniProt O15230 · UniProt P07942 · UniProt P11047
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