MolNFT v1 · #174548 · protein

Crystal structure of exo-beta-1,3-galactanase from phanerochaete chrysosporium PC1,3GAL43A E208A with beta-1,3-galactotriose

7BYX: “Crystal structure of exo-beta-1,3-galactanase from phanerochaete chrysosporium PC1,3GAL43A E208A with…”. X-ray diffraction, 6 ligands (NAG, GAL, MAN). MolNFT v1 #174548 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7BYX
Type: protein
Length: 1,708 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q50KB2
Ligands: NAG, GAL, MAN, NDG, BMA, CA

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D	—	protein	427	—	Q50KB2

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 21 copies · chains A, C, B, D
GAL · beta-D-galactopyranose · sugar · 12 copies · chains A, B, C, D
MAN · alpha-D-mannopyranose · sugar · 5 copies
NDG · 2-acetamido-2-deoxy-alpha-D-glucopyranose · sugar · 2 copies · chains C
BMA · beta-D-mannopyranose · sugar
CA · Calcium ion · metal · 4 copies · chains A, B, C, D
GOL · Glycerol · additive · 19 copies · chains A, B, C, D
ACT · Acetate ion · additive · 9 copies · chains A, B, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7BYX · Crystal structure of exo-beta-1,3-galactanase from Phanerochaete chrysosporium… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q50KB2
Elsewhere: RCSB PDB 7BYX · PDBe 7BYX · UniProt Q50KB2

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