MolNFT v1 · #174486 · protein

Mycobacterium smegmatis arabinosyltransferase complex EMBB2-ACPM2 in substrate dpa bound asymmetric "active state"

7BWR: “Mycobacterium smegmatis arabinosyltransferase complex EMBB2-ACPM2 in substrate dpa bound asymmetric "active…”. Electron microscopy, 2 ligands (F8L, CA). MolNFT v1 #174486 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7BWR
Type: protein
Length: 2,064 residues
Chains: 4
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: I7GAQ2, A0R0B3
Ligands: F8L, CA

Structure

electron microscopy · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	1058	—	I7GAQ2
B	—	protein	850	—	I7GAQ2
C, D	—	protein	78	—	A0R0B3

Ligands and binding sites

F8L · [(2Z,6E,10E,14Z,18E,22Z,26Z)-3,7,11,15,19,23,27,31,35, 39-decamethyltetraconta-2,6,10,14,18,22,26,30,34,38-decaenyl] [(2S,3S,4S,5R)-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl] hydrogen phosphate · ligand · chains A, B
CA · Calcium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7BWR · Mycobacterium smegmatis arabinosyltransferase complex EmbB2-AcpM2 in substrate DPA bound… · the same entry in another collection · chain A against A, TM-score 1.00
A0R0B3 · AlphaFold monomer V2.0 prediction for meromycolate extension acyl carrier protein (A0R0B3) · a predicted model of the same protein · chain D against A, TM-score 0.85

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt I7GAQ2
Every structure of UniProt A0R0B3
Elsewhere: RCSB PDB 7BWR · PDBe 7BWR · UniProt I7GAQ2 · UniProt A0R0B3

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