MolNFT v1 · #174427 · protein + RNA
The NSP12-NSP7-NSP8 complex bound to the template-primer RNA and triphosphate form of REMDESIVIR(RTP)
7BV2: “The NSP12-NSP7-NSP8 complex bound to the template-primer RNA and triphosphate form of REMDESIVIR(RTP)”. Electron microscopy, 4 ligands (POP, F86, ZN). MolNFT v1 #174427 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7BV2
- Type
- protein + RNA
- Length
- 1,036 residues
- Chains
- 5
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTD1
- Ligands
- POP, F86, ZN, MG
Structure
electron microscopy · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 834 | — | P0DTD1 |
| B | — | protein | 114 | — | P0DTD1 |
| C | — | protein | 63 | — | P0DTD1 |
| P | — | rna | 11 | — | — |
| T | — | rna | 14 | — | — |
Ligands and binding sites
- POP · Pyrophosphate 2- · ligand · chains A
- F86 · [(2~{R},3~{S},4~{R},5~{R})-5-(4-azanylpyrrolo[2,1-F][1, 2,4]triazin-7-yl)-5-cyano-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate · ligand · chains A, P, T
- ZN · Zinc ion · metal · 2 copies · chains A
- MG · Magnesium ion · metal · 2 copies · chains A, P
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7BV2 · The nsp12-nsp7-nsp8 complex bound to the template-primer RNA and triphosphate form of… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTD1
- Elsewhere: RCSB PDB 7BV2 · PDBe 7BV2 · UniProt P0DTD1
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.