MolNFT v1 · #173977 · protein
Cryo-EM structure of kdpfabc in E2PI state with BEF3 and K+
7BH2: “Cryo-EM structure of kdpfabc in E2PI state with BEF3 and K+”. Electron microscopy, 4 ligands (9Y0, BEF, K). MolNFT v1 #173977 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7BH2
- Type
- protein
- Length
- 1,450 residues
- Chains
- 4
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P03959, P03960, P03961, P36937
- Ligands
- 9Y0, BEF, K, MG
Structure
electron microscopy · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 557 | — | P03959 |
| B | — | protein | 674 | — | P03960 |
| C | — | protein | 190 | — | P03961 |
| D | — | protein | 29 | — | P36937 |
Ligands and binding sites
- 9Y0 · (2R)-3-(((2-aminoethoxy)(hydroxy)phosphoryl)oxy)-2-(palmitoyloxy)propyl (E)-octadec-9-enoate · ligand · chains A, B
- BEF · Beryllium trifluoride ion · ligand · chains B
- K · Potassium ion · metal · 2 copies · chains A
- MG · Magnesium ion · metal · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7BH2 · Cryo-EM Structure of KdpFABC in E2Pi state with BeF3 and K+ · the same entry in another collection · chain D against D, TM-score 1.00
- P03959 · AlphaFold monomer V2.0 prediction for potassium-transporting ATPase potassium-binding… · a predicted model of the same protein · chain A against A, TM-score 1.00
- P03961 · AlphaFold monomer V2.0 prediction for potassium-transporting ATPase kdpc subunit (P03961) · a predicted model of the same protein · chain C against A, TM-score 0.97
- P36937 · AlphaFold monomer V2.0 prediction for potassium-transporting ATPase kdpf subunit (P36937) · a predicted model of the same protein · chain D against A, TM-score 0.78
- P03960 · AlphaFold monomer V2.0 prediction for potassium-transporting ATPase ATP-binding subunit… · a predicted model of the same protein · chain B against A, TM-score 0.60
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03959
- Every structure of UniProt P03960
- Every structure of UniProt P03961
- Every structure of UniProt P36937
- Elsewhere: RCSB PDB 7BH2 · PDBe 7BH2 · UniProt P03959 · UniProt P03960 · UniProt P03961 · UniProt P36937
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