MolNFT v1 · #173732 · protein
Crystal structure of human 5' exonuclease appollo apo form
7B9B · 5' exonuclease apollo: “Crystal structure of human 5' exonuclease appollo apo form”. X-ray diffraction, 1 ligand (NI), 2 pockets (best druggability 0.48). MolNFT v1 #173732 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 7B9B
- Type
- protein
- Length
- 312 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5' exonuclease apollo
- EC
- 3.1.-.-
- UniProt
- Q9H816
- Ligands
- NI
- Pockets
- 2 · best druggability 0.48
Structure
x-ray diffraction · 1 distinct chain · 29% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 5' exonuclease apollo (EC 3.1.-.-) | protein | 312 | 29% helix, 23% strand | Q9H816 |
Ligands and binding sites
- NI · Nickel (II) ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 145 | 0.48 | 0.78 | 24 | empty |
| 2 | 123 | 0.42 | 0.76 | 19 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9H816
- Elsewhere: RCSB PDB 7B9B · PDBe 7B9B · UniProt Q9H816
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