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MolNFT v1 · #173685 · protein

Deampylation complex of monomeric ficd and ampylated bip (state 2)

7B80: “Deampylation complex of monomeric ficd and ampylated bip (state 2)”. X-ray diffraction, 4 ligands (AMP, K, MG). MolNFT v1 #173685 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
7B80
Type
protein
Length
863 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
G3I8R9, Q9BVA6
Ligands
AMP, K, MG, PO4

Structure

x-ray diffraction · 2 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
B—protein523—G3I8R9
A—protein340—Q9BVA6

Ligands and binding sites

  • AMP · Adenosine monophosphate · ligand · chains B, A
  • K · Potassium ion · metal · 3 copies · chains B
  • MG · Magnesium ion · metal · 2 copies · chains B, A
  • PO4 · Phosphate ion · ion · chains B
  • P33 · 3,6,9,12,15,18-hexaoxaicosane-1,20-diol · additive · 2 copies · chains A
  • PEG · Di(hydroxyethyl)ether · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 7B80 · DeAMPylation complex of monomeric FICD and AMPylated BiP (state 2) · the same entry in another collection · chain B against B, TM-score 1.00
  • G3I8R9 · AlphaFold monomer V2.0 prediction for endoplasmic reticulum chaperone bip (G3I8R9) · a predicted model of the same protein · chain B against A, TM-score 0.98
  • Q9BVA6 · AlphaFold monomer V2.0 prediction for protein adenylyltransferase ficd (Q9BVA6) · a predicted model of the same protein · chain A against A, TM-score 0.95

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